Tutorials and Notebooks
========================

Tutorials and notebooks about how to use AlphaBase.


Basics
------

.. toctree::
   :maxdepth: 1

   tutorials/tutorial_basic_definitions
   tutorials/tutorial_dataframe_structures


Spectral libraries
------------------

.. toctree::
   :maxdepth: 1

   tutorials/tutorial_spectral_libraries
   nbs/library_from_fasta


Reader
------
.. toctree::
   :maxdepth: 1

   nbs/psm_readers
   nbs/library_reader
   tutorials/tutorial_pg_reader
   tutorials/tutorial_scverse_compatibility


Chemical structures
-------------------
.. toctree::
   :maxdepth: 1

   nbs/tutorial_smiles
   nbs/peptide_smiles
   tutorials/adding_smiles