Library reader with fragments#
[1]:
%reload_ext autoreload
%autoreload 2
SWATH/Spectronaut TSV library reader (SWATHLibraryReader).
[2]:
from alphabase.spectral_library.reader import SWATHLibraryReader
from io import StringIO
tsv_str = """PrecursorCharge ModifiedPeptide StrippedPeptide iRT LabeledPeptide PrecursorMz FragmentLossType FragmentNumber FragmentType FragmentCharge FragmentMz RelativeIntensity IonMobility
2 _DPLAVDK_ DPLAVDK -15.0871 _DPLAVDK_ 379.2081611 noloss 3 b 1 326.1710473 14.37029 0.9
2 _DPLAVDK_ DPLAVDK -15.0871 _DPLAVDK_ 379.2081611 noloss 3 y 1 361.2081611 37.7585 0.9
2 _DPLAVDK_ DPLAVDK -15.0871 _DPLAVDK_ 379.2081611 noloss 4 b 1 397.2081611 9.488808 0.9
2 _DPLAVDK_ DPLAVDK -15.0871 _DPLAVDK_ 379.2081611 noloss 4 y 1 432.2452749 100 0.9
2 _DPLAVDK_ DPLAVDK -15.0871 _DPLAVDK_ 379.2081611 noloss 5 b 1 496.276575 5.498003 0.9
2 _DPLAVDK_ DPLAVDK -15.0871 _DPLAVDK_ 379.2081611 noloss 5 y 1 545.3293389 74.56643 0.9
2 _DPLAVDK_ DPLAVDK -15.0871 _DPLAVDK_ 379.2081611 noloss 6 y 2 321.6946896 51.50719 0.9
2 _AVVVS[Phospho (STY)]PK_ AVVVSPK -22.84974 _AVVVS[Phospho (STY)]PK_ 390.2067795 noloss 3 y 1 411.1639269 6.911595 0.9
2 _AVVVS[Phospho (STY)]PK_ AVVVSPK -22.84974 _AVVVS[Phospho (STY)]PK_ 390.2067795 H3PO4 3 y 1 313.1870287 17.38582 0.9
2 _AVVVS[Phospho (STY)]PK_ AVVVSPK -22.84974 _AVVVS[Phospho (STY)]PK_ 390.2067795 noloss 4 y 1 510.2323409 10.65426 0.9
2 _AVVVS[Phospho (STY)]PK_ AVVVSPK -22.84974 _AVVVS[Phospho (STY)]PK_ 390.2067795 H3PO4 4 y 1 412.2554427 37.41231 0.9
2 _AVVVS[Phospho (STY)]PK_ AVVVSPK -22.84974 _AVVVS[Phospho (STY)]PK_ 390.2067795 noloss 5 y 1 609.3007548 45.03617 0.9
2 _AVVVS[Phospho (STY)]PK_ AVVVSPK -22.84974 _AVVVS[Phospho (STY)]PK_ 390.2067795 H3PO4 5 y 1 511.3238566 100 0.9
2 _MGS[Phospho (STY)]LDSK_ MGSLDSK -27.5635 _MGS[Phospho (STY)]LDSK_ 409.1617118 noloss 3 y 1 349.1717756 9.20575 0.9
2 _MGS[Phospho (STY)]LDSK_ MGSLDSK -27.5635 _MGS[Phospho (STY)]LDSK_ 409.1617118 noloss 6 y 1 686.2756622 10.37339 0.9
2 _MGS[Phospho (STY)]LDSK_ MGSLDSK -27.5635 _MGS[Phospho (STY)]LDSK_ 409.1617118 H3PO4 6 y 1 588.298764 100 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 noloss 3 y 1 347.2288965 88.27327 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 H3PO4 3 b 1 256.1291795 64.97146 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 noloss 4 y 1 494.2973105 100 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 H3PO4 4 b 1 403.1975934 35.17805 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 noloss 5 y 1 661.2956694 19.89741 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 H3PO4 5 b 1 490.2296218 40.04738 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 H3PO4 5 y 1 563.3187712 77.43164 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 noloss 6 b 1 701.290584 24.43497 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 H3PO4 6 b 1 603.3136858 63.09999 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 1(+H2+O)1(+H3+O4+P) 3 b 1 238.1186147 62.60851 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 1(+H2+O)1(+H3+O4+P) 5 b 1 472.219057 22.99903 0.9
1 _SVS[Phospho (STY)]FSLK_ SVSFSLK 35.01411 _SVS[Phospho (STY)]FSLK_ 847.3961117 1(+H2+O)1(+H3+O4+P) 6 b 1 585.303121 66.30389 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 noloss 3 y 1 329.1931797 100 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 H3PO4 3 b 1 268.165565 5.755442 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 noloss 4 b 2 267.0740493 8.743931 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 noloss 4 y 1 496.1915387 27.69686 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 H3PO4 4 b 1 435.1639239 6.162673 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 2(+H3+O4+P) 4 b 1 337.1870258 10.84257 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 H3PO4 4 y 1 398.2146405 26.28527 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 H3PO4 5 y 1 497.2830544 28.41294 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 noloss 6 y 1 762.2583115 8.490795 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 H3PO4 6 y 1 664.2814133 32.87384 0.9
2 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ VSVSPGR -23.93085 _VS[Phospho (STY)]VS[Phospho (STY)]PGR_ 431.1670009 2(+H3+O4+P) 6 y 1 566.3045151 35.87218 0.9
2 _YSLS[Phospho (STY)]PSK_ YSLSPSK -6.428198 _YSLS[Phospho (STY)]PSK_ 431.1913264 noloss 3 y 1 331.1975964 49.20179 0.9
2 _YSLS[Phospho (STY)]PSK_ YSLSPSK -6.428198 _YSLS[Phospho (STY)]PSK_ 431.1913264 noloss 4 y 1 498.1959553 10.89141 0.9
2 _YSLS[Phospho (STY)]PSK_ YSLSPSK -6.428198 _YSLS[Phospho (STY)]PSK_ 431.1913264 H3PO4 4 y 1 400.2190571 27.99594 0.9
2 _YSLS[Phospho (STY)]PSK_ YSLSPSK -6.428198 _YSLS[Phospho (STY)]PSK_ 431.1913264 noloss 5 y 1 611.2800193 14.11057 0.9
2 _YSLS[Phospho (STY)]PSK_ YSLSPSK -6.428198 _YSLS[Phospho (STY)]PSK_ 431.1913264 H3PO4 5 y 1 513.3031211 70.5295 0.9
2 _YSLS[Phospho (STY)]PSK_ YSLSPSK -6.428198 _YSLS[Phospho (STY)]PSK_ 431.1913264 noloss 6 y 1 698.3120477 60.23455 0.9
2 _YSLS[Phospho (STY)]PSK_ YSLSPSK -6.428198 _YSLS[Phospho (STY)]PSK_ 431.1913264 H3PO4 6 y 1 600.3351495 100 0.9
2 _YSLS[Phospho (STY)]PSK_ YSLSPSK -6.428198 _YSLS[Phospho (STY)]PSK_ 431.1913264 1(+H2+O)1(+H3+O4+P) 6 y 1 582.3245847 5.233977 0.9
"""
reader = SWATHLibraryReader()
psm_df = reader.import_file(StringIO(tsv_str))
for col in ['sequence','charge','rt','rt_norm','mods','mod_sites','nAA','frag_start_idx','frag_stop_idx']:
assert col in psm_df.columns
reader.psm_df
[2]:
| sequence | charge | rt | mobility | mods | mod_sites | nAA | frag_start_idx | frag_stop_idx | rt_norm | precursor_mz | ccs | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | AVVVSPK | 2 | -22.849740 | 0.9 | Phospho@S | 5 | 7 | 0 | 6 | 0.075327 | 390.206780 | 366.858877 |
| 1 | DPLAVDK | 2 | -15.087100 | 0.9 | 7 | 6 | 12 | 0.199375 | 379.208161 | 367.043100 | ||
| 2 | MGSLDSK | 2 | -27.563500 | 0.9 | Phospho@S | 3 | 7 | 12 | 18 | 0.000000 | 409.161712 | 366.564438 |
| 3 | SVSFSLK | 1 | 35.014110 | 0.9 | Phospho@S | 3 | 7 | 18 | 24 | 1.000000 | 847.396112 | 183.178171 |
| 4 | VSVSPGR | 2 | -23.930850 | 0.9 | Phospho@S;Phospho@S | 2;4 | 7 | 24 | 30 | 0.058050 | 431.167001 | 366.254833 |
| 5 | YSLSPSK | 2 | -6.428198 | 0.9 | Phospho@S | 4 | 7 | 30 | 36 | 0.337745 | 431.191327 | 366.254509 |
[3]:
reader.fragment_intensity_df
[3]:
| b_z1 | b_z2 | y_z1 | y_z2 | b_modloss_z1 | b_modloss_z2 | y_modloss_z1 | y_modloss_z2 | |
|---|---|---|---|---|---|---|---|---|
| 0 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 1 | 0.000000 | 0.000000 | 0.450362 | 0.000000 | 0.000000 | 0.0 | 1.000000 | 0.0 |
| 2 | 0.000000 | 0.000000 | 0.106543 | 0.000000 | 0.000000 | 0.0 | 0.374123 | 0.0 |
| 3 | 0.000000 | 0.000000 | 0.069116 | 0.000000 | 0.000000 | 0.0 | 0.173858 | 0.0 |
| 4 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 5 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 6 | 0.000000 | 0.000000 | 0.000000 | 0.515072 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 7 | 0.000000 | 0.000000 | 0.745664 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 8 | 0.143703 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 9 | 0.094888 | 0.000000 | 0.377585 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 10 | 0.054980 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 11 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 12 | 0.000000 | 0.000000 | 0.103734 | 0.000000 | 0.000000 | 0.0 | 1.000000 | 0.0 |
| 13 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 14 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 15 | 0.000000 | 0.000000 | 0.092058 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 16 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 17 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 18 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 19 | 0.000000 | 0.000000 | 0.198974 | 0.000000 | 0.000000 | 0.0 | 0.774316 | 0.0 |
| 20 | 0.000000 | 0.000000 | 1.000000 | 0.000000 | 0.649715 | 0.0 | 0.000000 | 0.0 |
| 21 | 0.000000 | 0.000000 | 0.882733 | 0.000000 | 0.351781 | 0.0 | 0.000000 | 0.0 |
| 22 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.400474 | 0.0 | 0.000000 | 0.0 |
| 23 | 0.244350 | 0.000000 | 0.000000 | 0.000000 | 0.631000 | 0.0 | 0.000000 | 0.0 |
| 24 | 0.000000 | 0.000000 | 0.084908 | 0.000000 | 0.000000 | 0.0 | 0.328738 | 0.0 |
| 25 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.284129 | 0.0 |
| 26 | 0.000000 | 0.000000 | 0.276969 | 0.000000 | 0.057554 | 0.0 | 0.262853 | 0.0 |
| 27 | 0.000000 | 0.087439 | 1.000000 | 0.000000 | 0.061627 | 0.0 | 0.000000 | 0.0 |
| 28 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 29 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 30 | 0.000000 | 0.000000 | 0.602346 | 0.000000 | 0.000000 | 0.0 | 1.000000 | 0.0 |
| 31 | 0.000000 | 0.000000 | 0.141106 | 0.000000 | 0.000000 | 0.0 | 0.705295 | 0.0 |
| 32 | 0.000000 | 0.000000 | 0.108914 | 0.000000 | 0.000000 | 0.0 | 0.279959 | 0.0 |
| 33 | 0.000000 | 0.000000 | 0.492018 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 34 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
| 35 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.0 | 0.000000 | 0.0 |
fragment mz values are theoritically calculated (not from the library files)
[4]:
reader.fragment_mz_df
[4]:
| b_z1 | b_z2 | y_z1 | y_z2 | b_modloss_z1 | b_modloss_z2 | y_modloss_z1 | y_modloss_z2 | |
|---|---|---|---|---|---|---|---|---|
| 0 | 72.044390 | 36.525833 | 708.369169 | 354.688223 | 0.000000 | 0.000000 | 610.392273 | 305.699775 |
| 1 | 171.112804 | 86.060040 | 609.300755 | 305.154016 | 0.000000 | 0.000000 | 511.323860 | 256.165568 |
| 2 | 270.181218 | 135.594247 | 510.232341 | 255.619809 | 0.000000 | 0.000000 | 412.255446 | 206.631361 |
| 3 | 369.249632 | 185.128454 | 411.163927 | 206.085602 | 0.000000 | 0.000000 | 313.187032 | 157.097154 |
| 4 | 536.247991 | 268.627634 | 244.165568 | 122.586422 | 438.271096 | 219.639186 | 0.000000 | 0.000000 |
| 5 | 633.300755 | 317.154016 | 147.112804 | 74.060040 | 535.323860 | 268.165568 | 0.000000 | 0.000000 |
| 6 | 116.034219 | 58.520748 | 642.382103 | 321.694690 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
| 7 | 213.086983 | 107.047130 | 545.329339 | 273.168308 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
| 8 | 326.171047 | 163.589162 | 432.245275 | 216.626276 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
| 9 | 397.208161 | 199.107719 | 361.208161 | 181.107719 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
| 10 | 496.276575 | 248.641926 | 262.139747 | 131.573512 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
| 11 | 611.303518 | 306.155397 | 147.112804 | 74.060040 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
| 12 | 132.047762 | 66.527519 | 686.275663 | 343.641470 | 0.000000 | 0.000000 | 588.298767 | 294.653022 |
| 13 | 189.069225 | 95.038251 | 629.254199 | 315.130738 | 0.000000 | 0.000000 | 531.277303 | 266.142290 |
| 14 | 356.067585 | 178.537431 | 462.255840 | 231.631558 | 258.090689 | 129.548983 | 0.000000 | 0.000000 |
| 15 | 469.151649 | 235.079463 | 349.171776 | 175.089526 | 371.174753 | 186.091015 | 0.000000 | 0.000000 |
| 16 | 584.178592 | 292.592934 | 234.144833 | 117.576055 | 486.201696 | 243.604486 | 0.000000 | 0.000000 |
| 17 | 671.210620 | 336.108948 | 147.112804 | 74.060040 | 573.233724 | 287.120500 | 0.000000 | 0.000000 |
| 18 | 88.039305 | 0.000000 | 760.364084 | 0.000000 | 0.000000 | 0.000000 | 662.387188 | 0.000000 |
| 19 | 187.107719 | 0.000000 | 661.295670 | 0.000000 | 0.000000 | 0.000000 | 563.318774 | 0.000000 |
| 20 | 354.106078 | 0.000000 | 494.297310 | 0.000000 | 256.129183 | 0.000000 | 0.000000 | 0.000000 |
| 21 | 501.174492 | 0.000000 | 347.228897 | 0.000000 | 403.197596 | 0.000000 | 0.000000 | 0.000000 |
| 22 | 588.206520 | 0.000000 | 260.196868 | 0.000000 | 490.229625 | 0.000000 | 0.000000 | 0.000000 |
| 23 | 701.290584 | 0.000000 | 147.112804 | 0.000000 | 603.313689 | 0.000000 | 0.000000 | 0.000000 |
| 24 | 100.075690 | 50.541483 | 762.258312 | 381.632794 | 0.000000 | 0.000000 | 664.281417 | 332.644347 |
| 25 | 267.074050 | 134.040663 | 595.259953 | 298.133615 | 169.097154 | 85.052215 | 497.283057 | 249.145167 |
| 26 | 366.142464 | 183.574870 | 496.191539 | 248.599408 | 268.165568 | 134.586422 | 398.214643 | 199.610960 |
| 27 | 533.140823 | 267.074050 | 329.193180 | 165.100228 | 435.163927 | 218.085602 | 0.000000 | 0.000000 |
| 28 | 630.193587 | 315.600432 | 232.140416 | 116.573846 | 532.216691 | 266.611984 | 0.000000 | 0.000000 |
| 29 | 687.215050 | 344.111163 | 175.118952 | 88.063114 | 589.238155 | 295.122716 | 0.000000 | 0.000000 |
| 30 | 164.070605 | 82.538941 | 698.312048 | 349.659662 | 0.000000 | 0.000000 | 600.335153 | 300.671214 |
| 31 | 251.102633 | 126.054955 | 611.280020 | 306.143648 | 0.000000 | 0.000000 | 513.303124 | 257.155200 |
| 32 | 364.186697 | 182.596987 | 498.195956 | 249.601616 | 0.000000 | 0.000000 | 400.219060 | 200.613168 |
| 33 | 531.185057 | 266.096167 | 331.197596 | 166.102436 | 433.208161 | 217.107719 | 0.000000 | 0.000000 |
| 34 | 628.237821 | 314.622548 | 234.144833 | 117.576055 | 530.260925 | 265.634101 | 0.000000 | 0.000000 |
| 35 | 715.269849 | 358.138563 | 147.112804 | 74.060040 | 617.292953 | 309.150115 | 0.000000 | 0.000000 |
More examples
[5]:
tsv_str = """ReferenceRun PrecursorCharge Workflow IntModifiedPeptide CV AllowForNormalization ModifiedPeptide StrippedPeptide iRT IonMobility iRTSourceSpecific BGSInferenceId IsProteotypic IntLabeledPeptide LabeledPeptide PrecursorMz ReferenceRunQvalue ReferenceRunMS1Response FragmentLossType FragmentNumber FragmentType FragmentCharge FragmentMz RelativeIntensity ExcludeFromAssay Database ProteinGroups UniProtIds Protein Name ProteinDescription Organisms OrganismId Genes Protein Existence Sequence Version FASTAName
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _ALVAT[+80]PGK_ True _ALVAT[Phospho (STY)]PGK_ ALVATPGK -5.032703 0.758 -5.032703 P19338 False _ALVAT[+80]PGK_ _ALVAT[Phospho (STY)]PGK_ 418.717511324722 0 10352 noloss 3 y 1 301.187031733932 53.1991 False sp P19338 P19338 NUCL_HUMAN Nucleolin Homo sapiens NCL 1 3 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _ALVAT[+80]PGK_ True _ALVAT[Phospho (STY)]PGK_ ALVATPGK -5.032703 0.758 -5.032703 P19338 False _ALVAT[+80]PGK_ _ALVAT[Phospho (STY)]PGK_ 418.717511324722 0 10352 H3PO4 4 y 1 384.224142529733 26.31595 False sp P19338 P19338 NUCL_HUMAN Nucleolin Homo sapiens NCL 1 3 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _ALVAT[+80]PGK_ True _ALVAT[Phospho (STY)]PGK_ ALVATPGK -5.032703 0.758 -5.032703 P19338 False _ALVAT[+80]PGK_ _ALVAT[Phospho (STY)]PGK_ 418.717511324722 0 10352 noloss 5 y 1 553.238154507802 54.60104 False sp P19338 P19338 NUCL_HUMAN Nucleolin Homo sapiens NCL 1 3 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _ALVAT[+80]PGK_ True _ALVAT[Phospho (STY)]PGK_ ALVATPGK -5.032703 0.758 -5.032703 P19338 False _ALVAT[+80]PGK_ _ALVAT[Phospho (STY)]PGK_ 418.717511324722 0 10352 H3PO4 5 y 1 455.261256314443 46.09977 False sp P19338 P19338 NUCL_HUMAN Nucleolin Homo sapiens NCL 1 3 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _ALVAT[+80]PGK_ True _ALVAT[Phospho (STY)]PGK_ ALVATPGK -5.032703 0.758 -5.032703 P19338 False _ALVAT[+80]PGK_ _ALVAT[Phospho (STY)]PGK_ 418.717511324722 0 10352 noloss 6 y 1 652.306568420792 100 False sp P19338 P19338 NUCL_HUMAN Nucleolin Homo sapiens NCL 1 3 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _ALVAT[+80]PGK_ True _ALVAT[Phospho (STY)]PGK_ ALVATPGK -5.032703 0.758 -5.032703 P19338 False _ALVAT[+80]PGK_ _ALVAT[Phospho (STY)]PGK_ 418.717511324722 0 10352 H3PO4 6 y 1 554.329670227433 50.4698 False sp P19338 P19338 NUCL_HUMAN Nucleolin Homo sapiens NCL 1 3 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TLT[+80]PPLR_ True _TLT[Phospho (STY)]PPLR_ TLTPPLR 27.71659 0.818 27.71659 Q5T200 False _TLT[+80]PPLR_ _TLT[Phospho (STY)]PPLR_ 439.230785875227 0.000138389150379226 23117 noloss 3 b 1 396.153027901512 6.3264 False sp Q5T200 Q5T200 ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 Homo sapiens ZC3H13 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TLT[+80]PPLR_ True _TLT[Phospho (STY)]PPLR_ TLTPPLR 27.71659 0.818 27.71659 Q5T200 False _TLT[+80]PPLR_ _TLT[Phospho (STY)]PPLR_ 439.230785875227 0.000138389150379226 23117 noloss 3 y 1 385.255780000092 29.70625 False sp Q5T200 Q5T200 ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 Homo sapiens ZC3H13 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TLT[+80]PPLR_ True _TLT[Phospho (STY)]PPLR_ TLTPPLR 27.71659 0.818 27.71659 Q5T200 False _TLT[+80]PPLR_ _TLT[Phospho (STY)]PPLR_ 439.230785875227 0.000138389150379226 23117 noloss 4 y 1 482.308543848942 100 False sp Q5T200 Q5T200 ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 Homo sapiens ZC3H13 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TLT[+80]PPLR_ True _TLT[Phospho (STY)]PPLR_ TLTPPLR 27.71659 0.818 27.71659 Q5T200 False _TLT[+80]PPLR_ _TLT[Phospho (STY)]PPLR_ 439.230785875227 0.000138389150379226 23117 noloss 5 y 1 663.322552838102 15.22549 False sp Q5T200 Q5T200 ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 Homo sapiens ZC3H13 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TLT[+80]PPLR_ True _TLT[Phospho (STY)]PPLR_ TLTPPLR 27.71659 0.818 27.71659 Q5T200 False _TLT[+80]PPLR_ _TLT[Phospho (STY)]PPLR_ 439.230785875227 0.000138389150379226 23117 H3PO4 5 y 1 565.345654644743 78.98973 False sp Q5T200 Q5T200 ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 Homo sapiens ZC3H13 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TLT[+80]PPLR_ True _TLT[Phospho (STY)]PPLR_ TLTPPLR 27.71659 0.818 27.71659 Q5T200 False _TLT[+80]PPLR_ _TLT[Phospho (STY)]PPLR_ 439.230785875227 0.000138389150379226 23117 H3PO4 6 y 1 678.429718621873 7.326889 False sp Q5T200 Q5T200 ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 Homo sapiens ZC3H13 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TLT[+80]PPLR_ True _TLT[Phospho (STY)]PPLR_ TLTPPLR 27.71659 0.818 27.71659 Q5T200 False _TLT[+80]PPLR_ _TLT[Phospho (STY)]PPLR_ 439.230785875227 0.000138389150379226 23117 NH3 3 y 1 368.229231614472 5.478241 False sp Q5T200 Q5T200 ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 Homo sapiens ZC3H13 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TLT[+80]PPLR_ True _TLT[Phospho (STY)]PPLR_ TLTPPLR 27.71659 0.818 27.71659 Q5T200 False _TLT[+80]PPLR_ _TLT[Phospho (STY)]PPLR_ 439.230785875227 0.000138389150379226 23117 noloss 6 y 2 388.706946641022 5.111521 False sp Q5T200 Q5T200 ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 Homo sapiens ZC3H13 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _AGS[+80]PDVLR_ True _AGS[Phospho (STY)]PDVLR_ AGSPDVLR -0.7970191 0.78 -0.7970191 Q8NDX6 True _AGS[+80]PDVLR_ _AGS[Phospho (STY)]PDVLR_ 447.707674917012 0 20561 noloss 3 y 1 387.271430064232 52.42308 False sp Q8NDX6 Q8NDX6 ZN740_HUMAN Zinc finger protein 740 Homo sapiens ZNF740 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _AGS[+80]PDVLR_ True _AGS[Phospho (STY)]PDVLR_ AGSPDVLR -0.7970191 0.78 -0.7970191 Q8NDX6 True _AGS[+80]PDVLR_ _AGS[Phospho (STY)]PDVLR_ 447.707674917012 0 20561 noloss 4 y 1 502.298373088062 9.560875 False sp Q8NDX6 Q8NDX6 ZN740_HUMAN Zinc finger protein 740 Homo sapiens ZNF740 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _AGS[+80]PDVLR_ True _AGS[Phospho (STY)]PDVLR_ AGSPDVLR -0.7970191 0.78 -0.7970191 Q8NDX6 True _AGS[+80]PDVLR_ _AGS[Phospho (STY)]PDVLR_ 447.707674917012 0 20561 noloss 5 y 1 599.351136936912 100 False sp Q8NDX6 Q8NDX6 ZN740_HUMAN Zinc finger protein 740 Homo sapiens ZNF740 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _AGS[+80]PDVLR_ True _AGS[Phospho (STY)]PDVLR_ AGSPDVLR -0.7970191 0.78 -0.7970191 Q8NDX6 True _AGS[+80]PDVLR_ _AGS[Phospho (STY)]PDVLR_ 447.707674917012 0 20561 H3PO4 6 y 2 334.689937067692 68.40089 False sp Q8NDX6 Q8NDX6 ZN740_HUMAN Zinc finger protein 740 Homo sapiens ZNF740 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _AGS[+80]PDVLR_ True _AGS[Phospho (STY)]PDVLR_ AGSPDVLR -0.7970191 0.78 -0.7970191 Q8NDX6 True _AGS[+80]PDVLR_ _AGS[Phospho (STY)]PDVLR_ 447.707674917012 0 20561 H3PO4 7 y 2 363.200668927977 27.03024 False sp Q8NDX6 Q8NDX6 ZN740_HUMAN Zinc finger protein 740 Homo sapiens ZNF740 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TRLS[+80]PPR_ True _TRLS[Phospho (STY)]PPR_ TRLSPPR -18.51872 0.785 -18.51872 Q96PK6 True _TRLS[+80]PPR_ _TRLS[Phospho (STY)]PPR_ 453.731484366392 0.000731277163140476 55003 noloss 3 y 1 369.224479871812 97.64322 False sp Q96PK6 Q96PK6 RBM14_HUMAN RNA-binding protein 14 Homo sapiens RBM14 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TRLS[+80]PPR_ True _TRLS[Phospho (STY)]PPR_ TRLSPPR -18.51872 0.785 -18.51872 Q96PK6 True _TRLS[+80]PPR_ _TRLS[Phospho (STY)]PPR_ 453.731484366392 0.000731277163140476 55003 noloss 4 b 1 538.238488860972 17.74173 False sp Q96PK6 Q96PK6 RBM14_HUMAN RNA-binding protein 14 Homo sapiens RBM14 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TRLS[+80]PPR_ True _TRLS[Phospho (STY)]PPR_ TRLSPPR -18.51872 0.785 -18.51872 Q96PK6 True _TRLS[+80]PPR_ _TRLS[Phospho (STY)]PPR_ 453.731484366392 0.000731277163140476 55003 H3PO4 4 b 1 440.261590667613 100 False sp Q96PK6 Q96PK6 RBM14_HUMAN RNA-binding protein 14 Homo sapiens RBM14 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TRLS[+80]PPR_ True _TRLS[Phospho (STY)]PPR_ TRLSPPR -18.51872 0.785 -18.51872 Q96PK6 True _TRLS[+80]PPR_ _TRLS[Phospho (STY)]PPR_ 453.731484366392 0.000731277163140476 55003 H3PO4 4 y 1 438.245940603473 7.038487 False sp Q96PK6 Q96PK6 RBM14_HUMAN RNA-binding protein 14 Homo sapiens RBM14 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TRLS[+80]PPR_ True _TRLS[Phospho (STY)]PPR_ TRLSPPR -18.51872 0.785 -18.51872 Q96PK6 True _TRLS[+80]PPR_ _TRLS[Phospho (STY)]PPR_ 453.731484366392 0.000731277163140476 55003 noloss 5 y 1 649.306902773962 6.46876 False sp Q96PK6 Q96PK6 RBM14_HUMAN RNA-binding protein 14 Homo sapiens RBM14 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TRLS[+80]PPR_ True _TRLS[Phospho (STY)]PPR_ TRLSPPR -18.51872 0.785 -18.51872 Q96PK6 True _TRLS[+80]PPR_ _TRLS[Phospho (STY)]PPR_ 453.731484366392 0.000731277163140476 55003 H3PO4 5 b 1 537.314354516463 10.4885 False sp Q96PK6 Q96PK6 RBM14_HUMAN RNA-binding protein 14 Homo sapiens RBM14 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TRLS[+80]PPR_ True _TRLS[Phospho (STY)]PPR_ TRLSPPR -18.51872 0.785 -18.51872 Q96PK6 True _TRLS[+80]PPR_ _TRLS[Phospho (STY)]PPR_ 453.731484366392 0.000731277163140476 55003 H3PO4 5 y 1 551.330004580603 20.62304 False sp Q96PK6 Q96PK6 RBM14_HUMAN RNA-binding protein 14 Homo sapiens RBM14 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _TRLS[+80]PPR_ True _TRLS[Phospho (STY)]PPR_ TRLSPPR -18.51872 0.785 -18.51872 Q96PK6 True _TRLS[+80]PPR_ _TRLS[Phospho (STY)]PPR_ 453.731484366392 0.000731277163140476 55003 1(+H3+N)1(+H3+O4+P) 4 b 1 423.235042281993 8.850685 False sp Q96PK6 Q96PK6 RBM14_HUMAN RNA-binding protein 14 Homo sapiens RBM14 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _S[+80]SPLSWR_ True _S[Phospho (STY)]SPLSWR_ SSPLSWR 32.96021 0.806 32.96021 Q8NEY1;Q8NEY1-3 False _S[+80]SPLSWR_ _S[Phospho (STY)]SPLSWR_ 456.702392575162 0.00218558823689818 6996 noloss 3 y 1 448.230293528242 74.2921 False sp Q8NEY1;Q8NEY1-3 Q8NEY1;Q8NEY1-3 NAV1_HUMAN Neuron navigator 1;Isoform of Q8NEY1, Isoform 3 of Neuron navigator 1 Homo sapiens NAV1 1; 2; MCT_human_UP000005640_9606;MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _S[+80]SPLSWR_ True _S[Phospho (STY)]SPLSWR_ SSPLSWR 32.96021 0.806 32.96021 Q8NEY1;Q8NEY1-3 False _S[+80]SPLSWR_ _S[Phospho (STY)]SPLSWR_ 456.702392575162 0.00218558823689818 6996 noloss 4 y 1 561.314357505372 100 False sp Q8NEY1;Q8NEY1-3 Q8NEY1;Q8NEY1-3 NAV1_HUMAN Neuron navigator 1;Isoform of Q8NEY1, Isoform 3 of Neuron navigator 1 Homo sapiens NAV1 1; 2; MCT_human_UP000005640_9606;MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _S[+80]SPLSWR_ True _S[Phospho (STY)]SPLSWR_ SSPLSWR 32.96021 0.806 32.96021 Q8NEY1;Q8NEY1-3 False _S[+80]SPLSWR_ _S[Phospho (STY)]SPLSWR_ 456.702392575162 0.00218558823689818 6996 noloss 5 y 1 658.367121354222 53.05514 False sp Q8NEY1;Q8NEY1-3 Q8NEY1;Q8NEY1-3 NAV1_HUMAN Neuron navigator 1;Isoform of Q8NEY1, Isoform 3 of Neuron navigator 1 Homo sapiens NAV1 1; 2; MCT_human_UP000005640_9606;MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _S[+80]SPLSWR_ True _S[Phospho (STY)]SPLSWR_ SSPLSWR 32.96021 0.806 32.96021 Q8NEY1;Q8NEY1-3 False _S[+80]SPLSWR_ _S[Phospho (STY)]SPLSWR_ 456.702392575162 0.00218558823689818 6996 H2O 4 y 1 543.303792701295 8.122206 False sp Q8NEY1;Q8NEY1-3 Q8NEY1;Q8NEY1-3 NAV1_HUMAN Neuron navigator 1;Isoform of Q8NEY1, Isoform 3 of Neuron navigator 1 Homo sapiens NAV1 1; 2; MCT_human_UP000005640_9606;MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _S[+80]SPLSWR_ True _S[Phospho (STY)]SPLSWR_ SSPLSWR 32.96021 0.806 32.96021 Q8NEY1;Q8NEY1-3 False _S[+80]SPLSWR_ _S[Phospho (STY)]SPLSWR_ 456.702392575162 0.00218558823689818 6996 NH3 4 y 1 544.287809119752 11.54993 False sp Q8NEY1;Q8NEY1-3 Q8NEY1;Q8NEY1-3 NAV1_HUMAN Neuron navigator 1;Isoform of Q8NEY1, Isoform 3 of Neuron navigator 1 Homo sapiens NAV1 1; 2; MCT_human_UP000005640_9606;MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 noloss 3 y 1 446.276181091502 14.71406 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 noloss 4 y 1 561.303124115332 33.08263 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 noloss 5 b 1 494.128269705652 6.559356 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 noloss 5 y 1 658.355887964182 100 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 H3PO4 5 b 1 396.151371512293 6.920845 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 noloss 6 b 1 607.212333682782 6.388004 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 H3PO4 6 b 1 509.235435489423 19.9082 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 H3PO4 6 y 2 364.192312581327 80.62402 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 H3PO4 7 b 1 695.314748439283 16.95742 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 H3PO4 7 y 2 392.703044441612 23.94268 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_100ug_test_S4-A1_1_25843 2 _GGS[+80]PDLWK_ True _GGS[Phospho (STY)]PDLWK_ GGSPDLWK 30.20072 0.775 30.20072 Q96JM3 True _GGS[+80]PDLWK_ _GGS[Phospho (STY)]PDLWK_ 470.202225398577 0 14524 1(+H2+O)1(+H3+O4+P) 6 b 1 491.224876407391 7.7026 False sp Q96JM3 Q96JM3 CHAP1_HUMAN Chromosome alignment-maintaining phosphoprotein 1 Homo sapiens CHAMP1 1 2 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 noloss 8 b 1 904.441074140122 13.24587 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 noloss 8 y 1 869.376438885762 9.73339 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 H3PO4 8 y 1 771.399540692403 15.5311 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 noloss 9 y 1 926.397902606332 62.03978 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 H3PO4 9 y 1 828.421004412973 100 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 noloss 10 y 1 1089.46123113888 27.16885 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 H3PO4 10 y 1 991.484332945523 37.66399 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 noloss 11 y 1 1218.50382422685 11.55311 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 H3PO4 11 y 1 1120.52692603349 14.68472 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 noloss 12 y 2 673.784839099472 19.2975 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 H3PO4 13 y 2 681.338421991357 5.416843 True tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 H2O 3 b 1 338.207432704965 52.51799 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 H2O 4 b 1 466.266010210245 11.00296 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 H2O 5 b 1 595.308603298215 40.71096 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 1(+H2+O)1(+H3+O4+P) 7 y 2 341.679569285214 6.94033 True tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 1(+H3+N)1(+H3+O4+P) 7 y 1 683.335878522073 9.944985 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 1(+H3+N)1(+H3+O4+P) 8 y 2 377.690134386797 6.051629 True tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 1(+H2+O)1(+H3+O4+P) 11 y 1 1102.51636122942 10.49513 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 1(+H3+N)1(+H3+O4+P) 11 y 1 1103.50037764787 5.966991 True tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 H2O 12 y 2 664.779556697433 18.91663 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 NH3 12 y 2 665.271564906662 5.459162 True tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _ELIQEYGAQS[+80]GGLEK_ True _ELIQEYGAQS[Phospho (STY)]GGLEK_ ELIQEYGAQSGGLEK 39.08461 1.081 39.08461 A0A075B730 False _ELIQEYGAQS[+80]GGLEK_ _ELIQEYGAQS[Phospho (STY)]GGLEK_ 851.390199620587 0 11732 1(+H2+O)1(+H3+O4+P) 12 y 2 615.791107600754 16.20821 False tr A0A075B730 A0A075B730 A0A075B730_HUMAN Isoform of P58107, Epiplakin Homo sapiens EPPK1 1 2 MCT_human2_UP000005640_9606_additional
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 3 b 1 329.181946353492 19.79472 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 3 y 1 331.233981926352 34.45748 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 4 y 1 444.318045903482 41.93548 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 5 b 1 573.251482465292 56.89149 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 5 y 1 559.344988927312 31.81818 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 6 y 1 687.403566432592 6.744868 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 7 y 1 801.446493873732 100 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 8 y 1 929.505071379012 6.158358 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 9 y 1 1016.53709978328 16.27566 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 10 y 1 1130.58002722442 14.07625 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 noloss 12 y 1 1374.64956333622 23.60704 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 H2O 3 b 1 311.171381549415 27.56598 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 NH3 8 y 1 912.478522993392 5.718475 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 NH3 9 y 1 999.510551397662 6.744868 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phospho_library15_S4-B3_1_25857 2 _NLTEDNSQNQDLIAK_ True _NLTEDNSQNQDLIAK_ NLTEDNSQNQDLIAK 12.65 1.092 12.65 Q9UBB4 False _NLTEDNSQNQDLIAK_ _NLTEDNSQNQDLIAK_ 851.915754844857 0.000129324282170273 6592 NH3 12 y 1 1357.6230149506 10.41056 False sp Q9UBB4 Q9UBB4 ATX10_HUMAN Ataxin-10 Homo sapiens ATXN10 1 1 MCT_human_UP000005640_9606
"""
reader = SWATHLibraryReader()
psm_df = reader.import_file(StringIO(tsv_str))
for col in ['sequence','charge','rt','rt_norm','mods','mod_sites','nAA','frag_start_idx','frag_stop_idx']:
assert col in psm_df.columns
assert 'raw_name' in psm_df.columns
psm_df
[5]:
| raw_name | sequence | charge | rt | mobility | mods | mod_sites | nAA | frag_start_idx | frag_stop_idx | rt_norm | precursor_mz | ccs | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | 202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phosph... | AGSPDVLR | 2 | -0.797019 | 0.780 | Phospho@S | 3 | 8 | 0 | 7 | 0.344252 | 447.707675 | 317.236399 |
| 1 | 202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phosph... | ALVATPGK | 2 | -5.032703 | 0.758 | Phospho@T | 5 | 8 | 7 | 14 | 0.261972 | 418.717512 | 308.612143 |
| 2 | 202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phosph... | ELIQEYGAQSGGLEK | 2 | 39.084610 | 1.081 | Phospho@S | 10 | 15 | 14 | 28 | 1.000000 | 851.390200 | 436.485165 |
| 3 | 202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phosph... | GGSPDLWK | 2 | 30.200720 | 0.775 | Phospho@S | 3 | 8 | 28 | 35 | 0.946396 | 470.202226 | 314.974129 |
| 4 | 202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phosph... | NLTEDNSQNQDLIAK | 2 | 12.650000 | 1.092 | 15 | 35 | 49 | 0.541092 | 851.915755 | 440.924535 | ||
| 5 | 202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phosph... | SSPLSWR | 2 | 32.960210 | 0.806 | Phospho@S | 1 | 7 | 49 | 55 | 1.000000 | 456.702393 | 327.713047 |
| 6 | 202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phosph... | TLTPPLR | 2 | 27.716590 | 0.818 | Phospho@T | 3 | 7 | 55 | 61 | 0.898140 | 439.230786 | 332.788837 |
| 7 | 202106018_TIMS03_EVO03_PaSk_SA_HeLa_EGF_Phosph... | TRLSPPR | 2 | -18.518720 | 0.785 | Phospho@S | 4 | 7 | 61 | 67 | 0.000000 | 453.731485 | 319.205696 |
[6]:
reader.fragment_intensity_df
[6]:
| b_z1 | b_z2 | y_z1 | y_z2 | b_modloss_z1 | b_modloss_z2 | y_modloss_z1 | y_modloss_z2 | |
|---|---|---|---|---|---|---|---|---|
| 0 | 0.000000 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.270302 |
| 1 | 0.000000 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.684009 |
| 2 | 0.000000 | 0.0 | 1.000000 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.000000 |
| 3 | 0.000000 | 0.0 | 0.095609 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.000000 |
| 4 | 0.000000 | 0.0 | 0.524231 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.000000 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 62 | 0.000000 | 0.0 | 0.064688 | 0.0 | 0.000000 | 0.0 | 0.206230 | 0.000000 |
| 63 | 0.000000 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.0 | 0.070385 | 0.000000 |
| 64 | 0.177417 | 0.0 | 0.976432 | 0.0 | 1.000000 | 0.0 | 0.000000 | 0.000000 |
| 65 | 0.000000 | 0.0 | 0.000000 | 0.0 | 0.104885 | 0.0 | 0.000000 | 0.000000 |
| 66 | 0.000000 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.0 | 0.000000 | 0.000000 |
67 rows × 8 columns
[7]:
reader.fragment_mz_df
[7]:
| b_z1 | b_z2 | y_z1 | y_z2 | b_modloss_z1 | b_modloss_z2 | y_modloss_z1 | y_modloss_z2 | |
|---|---|---|---|---|---|---|---|---|
| 0 | 72.044390 | 36.525833 | 823.370960 | 412.189118 | 0.000000 | 0.000000 | 725.394064 | 363.200670 |
| 1 | 129.065854 | 65.036565 | 766.349496 | 383.678386 | 0.000000 | 0.000000 | 668.372601 | 334.689939 |
| 2 | 296.064213 | 148.535745 | 599.351137 | 300.179207 | 198.087318 | 99.547297 | 0.000000 | 0.000000 |
| 3 | 393.116977 | 197.062127 | 502.298373 | 251.652825 | 295.140082 | 148.073679 | 0.000000 | 0.000000 |
| 4 | 508.143920 | 254.575598 | 387.271430 | 194.139353 | 410.167025 | 205.587151 | 0.000000 | 0.000000 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 62 | 258.156066 | 129.581671 | 649.306903 | 325.157090 | 0.000000 | 0.000000 | 551.330008 | 276.168642 |
| 63 | 371.240130 | 186.123703 | 536.222839 | 268.615058 | 0.000000 | 0.000000 | 438.245944 | 219.626610 |
| 64 | 538.238489 | 269.622883 | 369.224480 | 185.115878 | 440.261594 | 220.634435 | 0.000000 | 0.000000 |
| 65 | 635.291253 | 318.149265 | 272.171716 | 136.589496 | 537.314358 | 269.160817 | 0.000000 | 0.000000 |
| 66 | 732.344017 | 366.675647 | 175.118952 | 88.063114 | 634.367121 | 317.687199 | 0.000000 | 0.000000 |
67 rows × 8 columns
MSFragger generated dimethyl TSV library (noloss=’’)
[8]:
tsv_str = """PrecursorMz ProductMz Annotation ProteinId GeneName PeptideSequence ModifiedPeptideSequence PrecursorCharge LibraryIntensity NormalizedRetentionTime PrecursorIonMobility FragmentType FragmentCharge FragmentSeriesNumber FragmentLossType AverageExperimentalRetentionTime
300.150371 144.605147 y2^2 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 293.82037 2.957367634819564 y 2 2 256.87189917542054
300.150371 175.118953 y1^1 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 6975.805942 2.957367634819564 y 1 1 256.87189917542054
300.150371 188.111798 y4^3 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 699.9488765 2.957367634819564 y 3 4 256.87189917542054
300.150371 213.13460299999997 y3^2 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 3899.8066759999997 2.957367634819564 y 2 3 256.87189917542054
300.150371 231.125996 y5^3 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 557.755905 2.957367634819564 y 3 5 256.87189917542054
300.150371 277.13322200000005 b2^1 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 5213.9476395 2.957367634819564 b 1 2 256.87189917542054
300.150371 281.664059 y4^2 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 8268.719133999999 2.957367634819564 y 2 4 256.87189917542054
300.150371 288.203017 y2^1 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 7783.7707125 2.957367634819564 y 1 2 256.87189917542054
300.150371 346.185356 y5^2 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 892.8047019999998 2.957367634819564 y 2 5 256.87189917542054
300.150371 378.180901 b3^1 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 2861.0433905 2.957367634819564 b 1 3 256.87189917542054
300.150371 410.70665299999996 y6^2 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 1104.4970805 2.957367634819564 y 2 6 256.87189917542054
300.150371 425.261929 y3^1 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 10000.0 2.957367634819564 y 1 3 256.87189917542054
300.150371 461.23049299999997 y7^2 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 658.40723 2.957367634819564 y 2 7 256.87189917542054
300.150371 507.223495 b4^1 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 544.8236215 2.957367634819564 b 1 4 256.87189917542054
300.150371 562.320842 y4^1 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 758.6205095 2.957367634819564 y 1 4 256.87189917542054
300.150371 691.363436 y5^1 P09651 HNRNPA1 EDTEEHHLR (UniMod:199)EDTEEHHLR 4 386.09158199999996 2.957367634819564 y 1 5 256.87189917542054
300.851044 175.118953 y1^1 P14618 PKM MQHLIAR (UniMod:199)MQHLIAR 3 6232.253602000001 10.90490543435342 y 1 1 396.233918513634
300.851044 180.123704 y3^2 P14618 PKM MQHLIAR (UniMod:199)MQHLIAR 3 187.126964 10.90490543435342 y 2 3 396.233918513634
300.851044 215.11446800000002 b3^2 P14618 PKM MQHLIAR (UniMod:199)MQHLIAR 3 1356.0843869999999 10.90490543435342 b 2 3 396.233918513634
300.851044 236.66573599999998 y4^2 P14618 PKM MQHLIAR (UniMod:199)MQHLIAR 3 310.81490499999995 10.90490543435342 y 2 4 396.233918513634
300.851044 246.15606699999998 y2^1 P14618 PKM MQHLIAR (UniMod:199)MQHLIAR 3 8887.643795 10.90490543435342 y 1 2 396.233918513634
"""
reader = SWATHLibraryReader()
reader.import_file(StringIO(tsv_str))
[8]:
| sequence | charge | rt | mobility | mods | mod_sites | nAA | frag_start_idx | frag_stop_idx | rt_norm | precursor_mz | ccs | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | EDTEEHHLR | 4 | 2.957368 | NaN | Dimethyl:2H(4)@Any N-term | 0 | 9 | 0 | 8 | 0.271196 | 300.150369 | NaN |
| 1 | MQHLIAR | 3 | 10.904905 | NaN | Dimethyl:2H(4)@Any N-term | 0 | 7 | 8 | 14 | 1.000000 | 300.851043 | NaN |
[ ]: