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alphabase 1.9.1-dev0 documentation
alphabase 1.9.1-dev0 documentation
  • Installation
  • Tutorials and Notebooks
    • Tutorial: Basic Definitions and Settings
    • Tutorial: Peptide and Fragment DataFrames
    • Tutorial: Spectral Libraries
    • SpecLibFasta usage
    • PSM readers
    • Library reader with fragments
    • Protein Group readers
    • Developer Tutorial: Proteomics meets the scverse
    • Working with Amino Acids and Post-Translational Modifications using SMILES Notation
    • PeptideSmilesEncoder: Encoding Peptides to SMILES
    • Adding SMILES modifications
  • API
    • alphabase.peptide
      • alphabase.peptide.precursor
      • alphabase.peptide.fragment
      • alphabase.peptide.mass_calc
      • alphabase.peptide.mobility
    • alphabase.protein
      • alphabase.protein.fasta
      • alphabase.protein.protein_level_decoy
    • alphabase.spectral_library
      • alphabase.spectral_library.base
      • alphabase.spectral_library.flat
      • alphabase.spectral_library.decoy
      • alphabase.spectral_library.reader
      • alphabase.spectral_library.translate
    • alphabase.psm_reader
      • alphabase.psm_reader.psm_reader
      • alphabase.psm_reader.alphapept_reader
      • alphabase.psm_reader.pfind_reader
      • alphabase.psm_reader.maxquant_reader
      • alphabase.psm_reader.msfragger_reader
      • alphabase.psm_reader.dia_psm_reader
    • alphabase.pg_reader
      • alphabase.pg_reader.base
      • alphabase.pg_reader.alphadia_pg_reader
      • alphabase.pg_reader.alphapept_pg_reader
      • alphabase.pg_reader.diann_pg_reader
      • alphabase.pg_reader.fragpipe_pg_reader
      • alphabase.pg_reader.maxquant_pg_reader
      • alphabase.pg_reader.mztab_pg_reader
      • alphabase.pg_reader.spectronaut_reader
    • alphabase.io
      • alphabase.io.hdf
      • alphabase.io.tempmmap
    • alphabase.constants
      • alphabase.constants.atom
      • alphabase.constants.aa
      • alphabase.constants.modification
      • alphabase.constants.isotope
  • References
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alphabase.proteinΒΆ

  • alphabase.protein.fasta
  • alphabase.protein.protein_level_decoy
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