Tutorials and Notebooks¶ Tutorials and notebooks about how to use AlphaBase. Basics¶ Tutorial: Basic Definitions and Settings Tutorial: Peptide and Fragment DataFrames Spectral libraries¶ Tutorial: Spectral Libraries SpecLibFasta usage Reader¶ PSM readers Library reader with fragments Protein Group readers Developer Tutorial: Proteomics meets the scverse Chemical structures¶ Working with Amino Acids and Post-Translational Modifications using SMILES Notation PeptideSmilesEncoder: Encoding Peptides to SMILES Adding SMILES modifications