alphabase.psm_reader.alphapept_reader

Classes:

AlphaPeptReader(*[, column_mapping, ...])

Functions:

parse_ap(precursor)

Parser to parse peptide strings

class alphabase.psm_reader.alphapept_reader.AlphaPeptReader(*, column_mapping: dict = None, modification_mapping: dict = None, fdr=0.01, keep_decoy=False, **kwargs)

Bases: PSMReaderBase

Methods:

__init__(*[, column_mapping, ...])

Reading PSMs from alphapept's *.ms_data.hdf

__init__(*, column_mapping: dict = None, modification_mapping: dict = None, fdr=0.01, keep_decoy=False, **kwargs)

Reading PSMs from alphapept’s *.ms_data.hdf

alphabase.psm_reader.alphapept_reader.parse_ap(precursor)

Parser to parse peptide strings