alphabase.psm_reader.alphapept_reader¶

Reader for AlphaPept’s .ms_data.hdf files.

Classes:

AlphaPeptReader(*[, column_mapping, ...])

Reader for AlphaPept's .ms_data.hdf files.

Functions:

`parse_ap`(precursor)	Parser to parse peptide strings.
`register_readers`()	Register readers for AlphaPept's .ms_data.hdf files.

class alphabase.psm_reader.alphapept_reader.AlphaPeptReader(*, column_mapping: dict | None = None, modification_mapping: dict | None = None, fdr: float = 0.01, keep_decoy: bool = False, rt_unit: str | None = None, mod_seq_columns: List[str] | None = None, **kwargs)[source][source]¶

Bases: PSMReaderBase

Reader for AlphaPept’s .ms_data.hdf files.

alphabase.psm_reader.alphapept_reader.parse_ap(precursor: str) → Tuple[str, str, str, str, int][source]¶: Parser to parse peptide strings.

alphabase.psm_reader.alphapept_reader.register_readers() → None[source][source]¶: Register readers for AlphaPept’s .ms_data.hdf files.